Effects of Low-grade Weirs on Soil Microbial Communities to Advance Agricultural Best Management Practices for Nitrate Remediation

Baker, B. H., Kroger, R., Brooks, J., Smith, R., Prince Czarnecki, J. M., & Deng, D. (2018). Effects of Low-grade Weirs on Soil Microbial Communities to Advance Agricultural Best Management Practices for Nitrate Remediation. Journal of Environmental Quality. 47(5), 1155-1162. DOI:10.2134/jeq2017.12.0489.

Abstract

Agricultural fertilizer application throughout the Mississippi River basin has been identified as a major source of N pollution to the Gulf of Mexico. Using best management practices, such as low-grade weirs, has been identified as a potential solution to mitigate nutrient loads in agricultural runoff. This study assessed impacts of weir implementation in four agricultural drainage ditches (three with weirs and one control site) in the Mississippi Delta. Soil samples collected from field locations in spring 2013 were analyzed for denitrifier abundance using genes (16s ribosomal RNA [rRNA] genes, nosZ, nirS, and nirK) via quantitative polymerase chain reaction (qPCR), microbial community profiles via terminal-restriction fragment length polymorphism (T-RFLP) of 16s rRNA genes, soil parameters (C, N, and moisture), and vegetation presence at sample locations. Gene quantification was successful, except for nirK, which was found below detection limits (5000 gene copies g−1 soil). Distance from weirs was negatively correlated with 16S rRNA genes and soil moisture, and soil moisture was positively correlated with 16s rRNA and nirS gene abundance. Results of empirical Bayesian kriging did not exhibit obvious patterns of microbial diversity in relation to weir proximity. Preliminary assessment of seasonal trends showed genes 16s rRNA and nirS, soil N, and mean T-RF values to be greater in fall than in spring. Results highlight that weirs had no direct impact on microbial diversity or denitrification functional gene abundance. Correlations between microbial measures and environmental parameters suggest that adequate management of N runoff from agricultural landscapes will require ecological engineering beyond weirs to optimize N mitigation.